PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G043500.1
Common NamePHAVU_008G043500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 394aa    MW: 43915.7 Da    PI: 7.7864
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G043500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.9e-1672131155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Phvul.008G043500.1  72 SKFRGVSRHRWTGRYEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 131
                         79*******************888855655447*************************98 PP
2AP2574.6e-18174225155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  Phvul.008G043500.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDLAAIEYRG 225
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-1972141No hitNo description
PfamPF008474.0E-1372131IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1672141IPR016177DNA-binding domain
SMARTSM003801.6E-2473145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1573140IPR001471AP2/ERF domain
PROSITE profilePS5103219.5273139IPR001471AP2/ERF domain
PRINTSPR003673.1E-57485IPR001471AP2/ERF domain
CDDcd000181.70E-24174235No hitNo description
PfamPF008473.6E-14174225IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-18174235IPR016177DNA-binding domain
PROSITE profilePS5103218.742175233IPR001471AP2/ERF domain
SMARTSM003803.9E-26175239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-18175234IPR001471AP2/ERF domain
PRINTSPR003673.1E-5215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEMMNDNIIE VSVGKSQTSM AEGELQATRS VKRRRREVGA AVSSSGDDNN QQQLSKQHAG  60
ENSTINTTKR SSKFRGVSRH RWTGRYEAHL WDKLSWNITQ KKKGKQVYLG AYDEEESAAR  120
AYDLAALKYW GTSTFTNFPI SDYGKDMEIM QTMTKEEYLA TLRRKSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYGTQE EAARAYDLAA IEYRGINAVT NFDLSTYIKW  240
LKPGVGSTPE AKLEAHAVAE GQKVASPSNY ALTEDSKSSA IHNSFFSLDS LDSPVGQENF  300
GNKTYSFSSS KSSSPTALGL LLRSSLFREL VEKNSNVSGD EADGEVRKGE QPQIASDDDL  360
GGIFFDSIGD IPFVCDPIRY NLELQERDLQ SIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G043500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139600.10.0hypothetical protein PHAVU_008G043500g
TrEMBLV7B1790.0V7B179_PHAVU; Uncharacterized protein
STRINGXP_007139600.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-93AP2 family protein