PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G043000.1
Common NamePHAVU_008G043000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 540aa    MW: 58836.8 Da    PI: 7.8544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G043000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-30190249159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r++ed +++++tYeg+Hnh+
  Phvul.008G043000.1 190 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCSEDLSILITTYEGTHNHK 249
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31176251IPR003657WRKY domain
SuperFamilySSF1182906.93E-27183251IPR003657WRKY domain
PROSITE profilePS5081128.024185251IPR003657WRKY domain
SMARTSM007741.8E-35190250IPR003657WRKY domain
PfamPF031062.7E-26191249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSSPGSPKIE EKIITKEDKV KSAKTEMGEV KEENERLKKT LERVEKDYHS LQLRFFDILH  60
KDVSKKGVVD SSTSHEDQSE EPEFVSLCLG RTPTEPKKEA IIGNSNKPTE KEVGPNLTLG  120
LDSKHLLEME VVSDLSPMNS SEEPKETQTE GTLSTNQSAK VINVNTDISD QMPAKRARVS  180
VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP TCPVRKQVQR CSEDLSILIT  240
TYEGTHNHKL PVSATAMAST TSAAASMLLS GSSTSHLPSH ISASFGNAPT TLLNGLSFSD  300
QFHESRAKQI FSPPNHASSH TFSTITLDLT SSAPSSSSTQ FHHGLPSTMA SISNPRSSAS  360
LSFCSPEHNF IPSIWGKGFH DNGTTTTPVD RVPTRPIMQP NNFLQHFYQQ RITSQTPSRE  420
ALAETITKAI STDPSFRSVI AAAVSSIVEH GSNSGKQEVS EDILGSGLNL KLGEHHQSAS  480
PNPLNQNGKG CLTGYFKSLS SKSSESGNVL LLQPPLPFSF SKSVTNQINR YVPEMNTHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21177251174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G043000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139595.10.0hypothetical protein PHAVU_008G043000g
TrEMBLV7B1750.0V7B175_PHAVU; Uncharacterized protein
STRINGXP_007139595.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-75WRKY DNA-binding protein 72