PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G039300.1
Common NamePHAVU_008G039300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 402aa    MW: 45535.3 Da    PI: 4.3188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G039300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-194291255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Phvul.008G039300.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91
                        789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.43E-324198No hitNo description
PfamPF008479.9E-144291IPR001471AP2/ERF domain
SMARTSM003802.5E-3642105IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-194299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-274298IPR001471AP2/ERF domain
PROSITE profilePS5103219.5594299IPR001471AP2/ERF domain
PRINTSPR003675.8E-84354IPR001471AP2/ERF domain
PRINTSPR003675.8E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MARKRKVSEE VEERNPSEET MAWDEVMKEA AALGSGRRLR KRFVGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP TSQSSSTPAL PSKITNLLLQ  120
RLKARNNNTR TNPCTLSSSS SSTSLSINQQ QSQQEDVRGA ESTYFTLDQF SDFLNDSEDY  180
STNNNEFSND SAQIDCITSS LESCLNENDD CREKEKEMEM EFDFNSVTQT SSADIKEDNE  240
EGTDLSTQDF QFLDNVVPSS YHYSLFEITE EIEEQLEPEN YGDEPSILRE VMKRMKYERK  300
SSASLYTFNG IPECLKLKLE SGNKNRGGVC ISNQLTNLKM ACSKNKIEGI EKNEEYIEAM  360
DMKEPQTSVG MDCSFPSFSS SIDDELLLWN SLDLPTIFCV N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G039300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139548.10.0hypothetical protein PHAVU_008G039300g
TrEMBLV7B0W20.0V7B0W2_PHAVU; Uncharacterized protein
STRINGXP_007139548.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11