PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 150aa MW: 16623.1 Da PI: 6.5297

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G272800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.9	1.4e-19	19	69	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ +r +lg+f taeeAa+a+++a+ +++g Phvul.007G272800.1 19 KYRGVRRRP-WGKYAAEIRD----SmRHgQRLWLGTFTTAEEAARAYDRAAYAMRG 69 8******.******....33236***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.79E-24	19	79	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.644	19	77	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-31	19	79	IPR001471	AP2/ERF domain
Pfam	PF00847	3.2E-14	19	69	IPR001471	AP2/ERF domain
SMART	SM00380	3.9E-36	19	83	IPR001471	AP2/ERF domain
CDD	cd00018	2.98E-19	19	79	No hit	No description
PRINTS	PR00367	3.5E-11	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MMNEEGSKGK SKDEEEHVKY RGVRRRPWGK YAAEIRDSMR HGQRLWLGTF TTAEEAARAY 60 DRAAYAMRGP FAVLNFPDQY PPSPAASSSS SSSVNASSSS SSVPSSSSHG RGRGRGRSEE 120 ASEVFEFEYF DDKLLEELLG YDDKNEHGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-34	16	134	11	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G272800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-116	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007145842.1	1e-105	hypothetical protein PHAVU_007G272800g
Swissprot	Q9LTC5	8e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	V7BMM3	1e-104	V7BMM3_PHAVU; Uncharacterized protein
STRING	XP_007145842.1	1e-105	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	1e-23	Ethylene-responsive element binding factor 14

Link Out ? help Back to Top
Phytozome	Phvul.007G272800.1
Entrez Gene	18627215

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]