PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G171400.1
Common NamePHAVU_007G171400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 317aa    MW: 35598.7 Da    PI: 9.8974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G171400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.27.9e-15116162455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Phvul.007G171400.1 116 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYVKQLR 162
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.606112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-20114182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-19116179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-14116166No hitNo description
PfamPF000102.2E-12116161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYFAAPHLLE DLTQEDNHYS ETVSNILQNQ SSRWPTSPTS VGYITYSPHS AFAKWSSRAS  60
HLFQPAVDGP SQWLLKYILF TVPYLHAKNP ADTSPQTAAD PKLRGKGTPQ DELSANHVLA  120
ERRRREKLNE RFVILRSLVP FVTKMDKASI LGDTIEYVKQ LRRKIQELEA RNRHTEAEHR  180
SKLPEVTVQR TSSNSSKEQQ RSGVTVMEKR KVRIVEGVAA KATAVEAEAA TSVQVSIIES  240
DALLEIECLH REGLLLDVMQ MLREVRIEVI GVQSSLNNGV FMAELRAKVK EHANGKKVSI  300
VEVKKALNRI IPHAVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-15116165857Transcription factor MYC2
5gnj_B6e-15116165857Transcription factor MYC2
5gnj_E6e-15116165857Transcription factor MYC2
5gnj_F6e-15116165857Transcription factor MYC2
5gnj_G6e-15116165857Transcription factor MYC2
5gnj_I6e-15116165857Transcription factor MYC2
5gnj_M6e-15116165857Transcription factor MYC2
5gnj_N6e-15116165857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125ERRRRE
2121126RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G171400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144627.10.0hypothetical protein PHAVU_007G171400g
SwissprotE3SXU41e-133BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLV7BJ880.0V7BJ88_PHAVU; Uncharacterized protein
STRINGXP_007144627.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-57bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]