PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G093100.1
Common NamePHAVU_007G093100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 1626aa    MW: 176963 Da    PI: 5.8989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G093100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08783824346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +WT++E e +++ ++ +G++ +++Ia+ +  ++t  +c+++++k
  Phvul.007G093100.1 783 PWTPQEREVFLEKFAAFGKN-FRKIASFLD-HKTIADCVEFYYK 824
                         8*****************99.*********.***********98 PP
2Myb_DNA-binding32.22.6e-109711010344
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                           WT +E   +++av  +G++ +++Iar++g +R+ +qck ++
  Phvul.007G093100.1  971 DWTDDERAAFLQAVSSFGKD-FAKIARRVG-TRSQEQCKVFF 1010
                          5*****************99.*********.********766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-14767827IPR009057Homeodomain-like
PROSITE profilePS5129315.892779830IPR017884SANT domain
SMARTSM007174.8E-8780828IPR001005SANT/Myb domain
PfamPF002491.7E-5782824IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-5782827IPR009057Homeodomain-like
PROSITE profilePS5129312.7259671028IPR017884SANT domain
SMARTSM007171.3E-89681016IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-99691018IPR009057Homeodomain-like
PfamPF002495.5E-99711010IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-79711010IPR009057Homeodomain-like
CDDcd001678.15E-89721010No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1626 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHREF NRWGPTEFRR PPGHGKQGGW  60
HLFSEDSGHG YAISRSSSDK ILEEDSRPSI SRGDGKYGRS SRENRGAFAQ RDWRGHSWEP  120
SNGTMNLPRR PQDVNNDQRA VDDALAYSSH PHSDFGNSWD QHHLKDQHEK IGSVNGMGTG  180
PRSDRENSLG DWKPLKWTRS GSLSSRGSGF SHSSSSRSMG AADSHEARAE LQTKSAAANE  240
SHSGEAAACA TSSVPSEDTA SRKKPRLNWG EGLAKYEKKK VEVPEPSANK DGPVLSASIT  300
EPCNFLSTSL VDKSPKVTGF SECASPATPS SVACSSSPGM DDKLFGKTAN VDNDVSNFIC  360
SPAPLSENNL QRFPFNLEKF DIGSLNNLGS SIIELVKSDD PTSVDSGPMR SNAINKLLIW  420
KADISKVLEM TESEIDLLEN ELRSLKSESR ETCQFPVSLD SQMLGCDEKS CEEHVGVSDQ  480
VTRPVPLNIV DDPNMEKVPL STNLLSIHES VKEEDIDSPG TATSKFVEPP PSIKSVSCGT  540
GGYVSFSRDV DSVPSAAVNC LIPCSARKDV SVCVSSVDGK TSMEVNDSMD ILWGTIISSN  600
KESANKASEV FDNLLPKDCC KIGKMETSSD TCNHTFIREK FAEKKRFARF KERVIALKFR  660
ALHHLWKEDM RLLSIRKCRP KSHKKNELSV RTTCNGNQKN RSSIRSRFPF PAGNHLSLVP  720
TSEMINFTGK LLSESQVKVQ RNTLKMPALI LDEKEKIISK FVSSNGLVED PLAIEKERSM  780
INPWTPQERE VFLEKFAAFG KNFRKIASFL DHKTIADCVE FYYKNHKSDC FEKLKKQDVG  840
KLGKSFSAKT DLLASGNKKI RAGSSLLGGY GKVKTSRVED FIEKSGSFDI LGDERETAAA  900
ADVLAGICGS LSSEAISSCI TSSVDPVEGS RDRKFLKVNP LYKLPMTPDV TQDVDDETCS  960
DESCGEMDPT DWTDDERAAF LQAVSSFGKD FAKIARRVGT RSQEQCKVFF SKGRKCLGLD  1020
LMRPISENVG SPVNDDANGG ESDTDDACVV ETGSVVGTEK SGTKTDEDLP LYGTNTFNDE  1080
SNPVQARNLS AELNESKGTN GTEVDIEDAN LVSDACAIDI DSKQGCDGSE FAACGSVSGQ  1140
AMSDSTENGK DKANKLGGAS IELISVPDTS EPCESNSFVG DRMVVSEVSS DRLGNELERQ  1200
RVSSPRCLDD RDNKQEADSG GIVDLKSPGH MLSSTVVNAS LSSFGNSCSG LSSSTENKHG  1260
PLRKASPLSM DDHQASSNSS LQNTVASDIQ CEKTASQDRL SSTCDIQVST DDKPPITGNS  1320
SDHVDAGSIL QGYPLQAPIK KEINGDMNSS SSATELHLLS QKNEQPDDQT KKLQSSDSDK  1380
ASRNGDVKLF GKILTNPSSA QKPNVGAKGS EENGTHHPKF SKPSSMKFTG HSADGNVKIL  1440
KFDCNDYVGL ENVPMRSYGY WDGSRIQTGL SSLPDSAILL AKYPAAFSNY PTSSAKLEQP  1500
SLQTFSKNNN ERLLNGSNAV IDYQMFRRDG PKVQPFMVDV KHCQDVFSEM QRRNGFEAIS  1560
SLQQQSRGVM GMNGVGRPGI LVGGSCSGVS DPVAAIKMHY SNSDKYGGQS GSIAREDESW  1620
GGKGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-18741832494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-18741832494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G093100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143686.10.0hypothetical protein PHAVU_007G093100g
TrEMBLV7BDQ30.0V7BDQ3_PHAVU; Uncharacterized protein
STRINGXP_007143686.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-171MYB family protein