PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G092000.1 | ||||||||
Common Name | PHAVU_007G092000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23662.3 Da PI: 6.484 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 9.8e-43 | 65 | 164 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+ Phvul.007G092000.1 65 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQ 155 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Phvul.007G092000.1 156 AQLAKAQAE 164 *****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.181 | 64 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-43 | 65 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDYKLNTTTP SPPIPIPIHV PSMLSNSPPS SSSSPPSHSP TPFPSPSPSP SAAPPSPPPP 60 VVVSPCAACK ILRRRCVEKC VLAPYFPPTD PLKFTIAHRV FGASNIIKFL QELPESQRAD 120 AVSSMVYEAN ARIRDPVYGC AGAICQLQKQ VSELQAQLAK AQAELVNMQC QQANLVALIC 180 MEMSQSQEQH VVQPQPLVDM SCFIEDNTFG TAWEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 56 | 172 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 56 | 172 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G092000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099113 | 0.0 | BT099113.1 Soybean clone JCVI-FLGm-13B15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143674.1 | 1e-157 | hypothetical protein PHAVU_007G092000g | ||||
Swissprot | Q9LQR0 | 3e-76 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | V7BFQ1 | 1e-155 | V7BFQ1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143674.1 | 1e-156 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-61 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G092000.1 |
Entrez Gene | 18625349 |