PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G048000.1 | ||||||||
Common Name | PHAVU_007G048000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25172.7 Da PI: 9.6171 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.7 | 2.1e-20 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks qvtfskRr g++KKA+EL++LC++e+a+++fs+ +k + + Phvul.007G048000.1 18 KIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSF 65 57789999*********************************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-28 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.918 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-25 | 10 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.07E-30 | 10 | 77 | No hit | No description |
PRINTS | PR00404 | 2.2E-16 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-22 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-16 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-16 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSKIKKSSLG RQKIPIEKIP KKSHLQVTFS KRRSGVFKKA SELCTLCGVE IAIVVFSPAD 60 KAFSFGHPEV ESLIDRYTTR NPPQDSSAHH LVEAHRNANV RDLNMQLTQV FNLLEVEKKR 120 GDDLDHVSKA RQRQFWWEGP VDELGLHELL QLKASIEELK KNIEKHATKF MIDHSSAISS 180 SSSILGPNHG FGALERYDAF DNKPDVGIAL PNAHYLSFRT GYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 9 | 94 | 1 | 87 | MEF2C |
5f28_B | 1e-16 | 9 | 94 | 1 | 87 | MEF2C |
5f28_C | 1e-16 | 9 | 94 | 1 | 87 | MEF2C |
5f28_D | 1e-16 | 9 | 94 | 1 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G048000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143150.1 | 1e-166 | hypothetical protein PHAVU_007G048000g | ||||
Swissprot | Q9FKK2 | 3e-53 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V7BBG3 | 1e-165 | V7BBG3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143150.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-55 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G048000.1 |
Entrez Gene | 18624895 |
Publications ? help Back to Top | |||
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