PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G027000.1
Common NamePHAVU_007G027000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 354aa    MW: 39102.1 Da    PI: 4.3023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G027000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18118166254
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         +y+GVr++k +g+W+AeIrd +     + +r++lg+f taeeA +a++a r+++e
  Phvul.007G027000.1 118 KYRGVRQRK-WGKWAAEIRDpF-----QsTRIWLGTFNTAEEASEAYEARRLEFE 166
                         8*******9.**********55.....45*******************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-12118167IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-16118165IPR016177DNA-binding domain
CDDcd000181.53E-17118150No hitNo description
Gene3DG3DSA:3.30.730.109.6E-22118166IPR001471AP2/ERF domain
SMARTSM003806.0E-17118181IPR001471AP2/ERF domain
PROSITE profilePS5103219.836118178IPR001471AP2/ERF domain
PRINTSPR003671.1E-10119130IPR001471AP2/ERF domain
PRINTSPR003671.1E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPESRKQPAS KPKQKPCHSL QESKSMRKLR IVYDDPDATD SSDDESEWMQ KQKKTKRSLC  60
EIPLPPLPQT FTSPETTSFE VNSNINAVRV KVCIEGQPQS RKRVLTQTPS ARRNTSGKYR  120
GVRQRKWGKW AAEIRDPFQS TRIWLGTFNT AEEASEAYEA RRLEFEAMAK ARAYKNVSEP  180
LPTTSDKSIC CNSSDAAAAV SVSEKFSTTF DDSDSVLSHP SPSSVLELDS SASKPIDKGN  240
LSNEEAAEAN DLVAELAELE IPDLSLLNSP SPFDRATAAA LPSGTEPDFG LDFDFVSFED  300
YGQGFDDFGG LEDINIYGFD DNEPSELPDF DFGDFCADEF AGWTEEPLNI PCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-121161591256Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G027000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142907.10.0hypothetical protein PHAVU_007G027000g
TrEMBLV7BEJ90.0V7BEJ9_PHAVU; Uncharacterized protein
STRINGXP_007142907.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-16ERF family protein