PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G191700.1
Common NamePHAVU_006G191700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 879aa    MW: 96694.9 Da    PI: 7.4528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G191700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18336435198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ + 
  Phvul.006G191700.1 336 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE- 424
                         99**************************555566778***************9989999999***9.********************766. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Phvul.006G191700.1 425 PEGRLVMGFRK 435
                         67767777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-20333435IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-30333443IPR015300DNA-binding pseudobarrel domain
CDDcd100178.13E-22334435No hitNo description
PfamPF023621.4E-15336435IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138336437IPR003340B3 DNA binding domain
SMARTSM010194.4E-21336437IPR003340B3 DNA binding domain
PROSITE profilePS5105014.265564614IPR011124Zinc finger, CW-type
PfamPF074968.1E-13569611IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MASASSSSSK LCFNSDCKEL RPERPKKGWR LRSGELAELC DRCGSAFEDG KFCEIFHSNA  60
SGWRSCETCR KRIHCGCIVS SHSFMLLDPG GIECYTCARK NIIMPSNLPW PQSFSLQNRL  120
SDRLRDLSAK GWNQLAGSGP VPWKQAPSLF NSASSSDLIS DVPSLAELSS SFDKMYCNER  180
LPASALEKKS EDFPGLPVHW NVTICPREMK HMNGMRNEDK ASSCLNMCQQ PSSMKEESSP  240
QPFGLPVPNS CQNERNGQLG VTGSHPQQTP PPPGKQFNGT MHLAPDSSGE AQVRNGRPRA  300
DARGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET  360
YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  420
SRLEPEGRLV MGFRKASSAA PSDQDNETNK SGNGFSAHGE VELADPNSWS KVDKSGYIAK  480
EALGSKSLIS RKRKSGLLGS KSKRLRIENE DLIELKITWQ EAQGLLRPPP SHIPSIVVIE  540
GFEFEEYEEA PVLGKPTIFT SDNVGEKIQW AQCEDCLKWR KLPASALLPS KWTCSDNSWD  600
PERSSCSAAQ ELTAEQLENL LPPCNSAVPK RMKATKQDPD NAEALEGLDT LANLAILGEG  660
EALPASAQAT TKHPRHRPGC SCIVCIQPPS GKGPKHKQTC TCNVCLTVKR RFHTLMLRRE  720
KKQSEKEAET TRKKQQQQHP QPLPSSEILL DEDSLPCSNT GDSSPNQNRE GNDGSDDDPN  780
RIKSSASPFK GQIDLNIQPE REEELSPGSD SGGMMKLLHD AATERYLKQQ TVNSGTGDSA  840
GSQSQLVGDA MREDKLSNGV THGSSSHSTD RNMANLCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-623144402128B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G191700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148240.10.0hypothetical protein PHAVU_006G191700g
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLV7BQJ40.0V7BQJ4_PHAVU; Uncharacterized protein
STRINGXP_007148240.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-145HSI2-like 1