PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G120800.1 | ||||||||
Common Name | PHAVU_006G120800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 37237.2 Da PI: 6.5226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9e-18 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W++ ar g++Rt+k+c++rw++yl Phvul.006G120800.1 25 RGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 72 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Phvul.006G120800.1 78 RGNITLEEQLLILELHGRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 121 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.232 | 20 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-30 | 22 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-16 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-11 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 17.994 | 77 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 80 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-7 | 93 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEVKGRVSNS TGTIVQSEDE IDLRRGPWTV DEDLALINYI ANHGEGRWNS LARSAGLKRT 60 GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHGRWGNRW SKIAQYLPGR TDNEIKNYWR 120 TRVQKHAKQL KCDVNSKQFK DAMRYLWMPR LVERIQAAAA TATAGSPTAS ASATTTITNN 180 NNTTYNYNNN LNNSFEVHSG NMMLSPAIMN NNFGGSQSYT PENSSTGASS DSFGTQVSPV 240 SELTQDYYNN VTVVNSNNNN NPNPDYYPQV QDQLSFLDCI TSPSGLFSQQ LDFQSMEPNT 300 PWIQSNGDTY NGFWNVENML LFQQLTDNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 22 | 119 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G120800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007147396.1 | 0.0 | hypothetical protein PHAVU_006G120800g | ||||
TrEMBL | V7BQR2 | 0.0 | V7BQR2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007147396.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 7e-85 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G120800.1 |
Entrez Gene | 18628565 |