PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G087000.1
Common NamePHAVU_006G087000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 672aa    MW: 76384.2 Da    PI: 5.6499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G087000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-5581351128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv++yL++k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd
  Phvul.006G087000.1   8 LPPGFRFHPTDEELVSYYLRRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKD 97 
                         79****************************.99***************6434445667********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v s ++ ++g+kktLv+y+grap+g +t Wvmheyrl
  Phvul.006G087000.1  98 RKVNS-QNCAIGMKKTLVYYRGRAPHGCRTGWVMHEYRL 135
                         *****.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-654158IPR003441NAC domain
PROSITE profilePS5100561.3138158IPR003441NAC domain
PfamPF023653.9E-309135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MNMAPVSLPP GFRFHPTDEE LVSYYLRRKI NGRKIELEII PEVDLYKCEP WDLPGKSLLP  60
GKDLEWYFFS PRDRKYPNGS RTNRATKSGY WKATGKDRKV NSQNCAIGMK KTLVYYRGRA  120
PHGCRTGWVM HEYRLDETQC ETNTGLQDAY ALCRVFKKTA VIPPKVGDQH YVNVSTSHAN  180
QIIASDQSSS INELYSEGRG EVLESSNYFM SMDTSPNING TAFNINGGRR DNETAWSHFL  240
SEDLLNLPTA STSSFPNYGS MSYPPSKVDV ALECARMQHR FSMPPLQMQD LDFPQVGISK  300
LKMEQGSSSM SGSRNETDIL QEILSVAHAS QELINQSNYS SQPFMNANEN YAPHETDFTF  360
MVGTNYNHVN DMNTMNMGFV DKAWEDKNTR SIEIGDLDDG FKTERMMENL RWVGMSSKNV  420
EKSFMEEQQN IVPIDDISNF QTNTEENELK VGFEKHSCNK EITDTEIDDF SMGFMNDEDP  480
NENFLNEENI DYSNSTNYDV VEETKTNHAM FVSTHQVADT FFHQIAPSQT VKVQLNPVMA  540
ANQCIEKATV KKGPSFFRKF KACVTGKLIK PSNTVASVLE FIFAFLLMHC VFLKGLVEDW  600
KPDLKRCGCV YSMKNMGEAT ESVPRNEQEK VWFVGIRYGK GFSMVLKKIS IFLTISLALF  660
TMWANHIIVD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-55415811168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G087000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146987.10.0hypothetical protein PHAVU_006G087000g
TrEMBLV7BQX80.0V7BQX8_PHAVU; Uncharacterized protein
STRINGXP_007146987.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-163NAC domain containing protein 28