PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G047300.1
Common NamePHAVU_006G047300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 445aa    MW: 48541.9 Da    PI: 7.9333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G047300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30226283258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         +Dg++WrKYGqK+ kg+++pr+YYrC++  gCpv+k+v+rsaed++v+++tYeg+Hnh
  Phvul.006G047300.1 226 SDGCQWRKYGQKMAKGNPCPRAYYRCSMGtGCPVRKQVQRSAEDQSVLITTYEGQHNH 283
                         7***************************98**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32210285IPR003657WRKY domain
PROSITE profilePS5081129.379220286IPR003657WRKY domain
SuperFamilySSF1182909.29E-27222286IPR003657WRKY domain
SMARTSM007741.3E-36225285IPR003657WRKY domain
PfamPF031066.3E-27227283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEEATSNDDS NIAPVTHSSL VFDGKRLVLD EMDFFAQKKK KKKKNVVPDD EMVHQMELHV  60
DTRLDLLTKS SPTMGEGSSE AKGNKRDDKF AAMVAELHHM NAENQRLRDQ VDQANDKYHA  120
LHNQVMKIME KRQKNEGKKA DMIPRPFLDI GVAMKEESSQ QHPKGKLQES KNQKICTTEL  180
EASEKVIPRV FSNSSFKDVD EASETMSMIK KARVSVRARS VSSMISDGCQ WRKYGQKMAK  240
GNPCPRAYYR CSMGTGCPVR KQVQRSAEDQ SVLITTYEGQ HNHVLPPAAK AMASTTSAAA  300
SMLLSGSMPS SDGLLHPSIL ESATLPFSQN LATLSASAPF PTITLDLTQS ATNTSSQQLP  360
QEAPQDSQLS LISPLLAPNL FNHQTKLSSL HGSQGTEPAS FADTVNAATA AITTDPKFSA  420
ALMAAITSII GSSHPVETQH CNNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-24212288176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G047300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146514.10.0hypothetical protein PHAVU_006G047300g
TrEMBLV7BN960.0V7BN96_PHAVU; Uncharacterized protein
STRINGXP_007146514.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.16e-67WRKY family protein