PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G028500.1
Common NamePHAVU_006G028500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 551aa    MW: 60928.3 Da    PI: 6.6451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G028500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.2e-17353399455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Phvul.006G028500.1 353 VHNQSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 399
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-20347414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.374349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-15352397No hitNo description
PfamPF000103.8E-15353399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-19353407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-18355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MNNSVPDWNF GSDSCVTTNP KKPMGVDQEL VELLWQNGQV VLHSQTHRKP VVNSIAPRPL  60
QRAFQSTLRT SEPFGNSSNL IQDDETVSWI QYPLEDPLEQ EFCSNLLSEL PQCDVESFKQ  120
IKPFEEGRFT KLDASSAPHV TVCSQSPTMK PSSFQEFSGI PIPAPRFHVS DSPQKNNNDL  180
GGPCKVQKFS HFSPTFNVSS ALPSAHFRDK ITCNMSKNEV RECSLMTVGS SYSGSNHMTQ  240
DPDASRASSN GVWTTTLSVD PEAVRDDVPR TIPLSEKGKS EMLEPAATSS SGGSGSSLGK  300
TCSLSTRNQS QKRKTIDIEE SEEHSEDTEL KSPVGNKTSQ RTGSARRNRA AEVHNQSERR  360
RRDRINEKMK ALQQLIPHSS KTDKASMLEE AIEYLKSLQL QLQLMWMGSG MTPMMFPGIQ  420
HYMSQMGMGM ATSPFPPIQN PMQLPRVPLD QPVSASQTPN QTMMCPNPIL GAFNYQNQMQ  480
NPALSEQYAR YMGYHLMQNA SQPMNVFRYG PQAVQYSQTM ITPSNSSGNM SGAANIDEAV  540
SDKMGSSTFN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357362ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G028500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146296.10.0hypothetical protein PHAVU_006G028500g
TrEMBLV7BMK80.0V7BMK8_PHAVU; Uncharacterized protein
STRINGXP_007146296.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.26e-44phytochrome interacting factor 4