PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G015700.1
Common NamePHAVU_006G015700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 270aa    MW: 31488.6 Da    PI: 7.0799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G015700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36261172102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+++ed+ +++++sw e+ ++fvv+ + ef++++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fkkg k+
  Phvul.006G015700.1  26 FLTKTYQLVEDPLTDHIVSWGEDDTTFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFKKGAKH 107
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  Phvul.006G015700.1 108 LLCEIHRRKT 117
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3818110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.1E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAFTVERFEE NMVFSFETQK SVPAPFLTKT YQLVEDPLTD HIVSWGEDDT TFVVWRPPEF  60
SRDLLPNYFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FKKGAKHLLC EIHRRKTPQL  120
HHQLYHDQPP SQILQQDESL CWLDTPLSSP KSSTDILTAL SEDNQRLRRK NFMLLSELSH  180
MKSLYNDIIY FIQNHVKAPP FEQRTSSAIQ KLVEFDSLNE PINNISLRTS KSSFVDKSFF  240
TSTEESDSSV KLFGVLLSGR KRLHPDNIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-202111716122Heat shock factor protein 1
5d5u_B2e-202111725131Heat shock factor protein 1
5d5v_B2e-202111725131Heat shock factor protein 1
5d5v_D2e-202111725131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G015700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146140.10.0hypothetical protein PHAVU_006G015700g
SwissprotQ7XHZ04e-88HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLV7BJF70.0V7BJF7_PHAVU; Uncharacterized protein
STRINGXP_007146140.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-89heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]