PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G171600.1
Common NamePHAVU_005G171600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 401aa    MW: 45586.9 Da    PI: 4.5441
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G171600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.5e-14171255286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++e+ +L++a  ++  + +r++l+   W++vsk + r  ++er+ +qC+++++ l+k+ykk+k+   +  ++   +++yf++++
  Phvul.005G171600.1 171 WTEHETFVLLDAWGYRFLQHGRKSLRCEEWQQVSKMVaRVSKIERTETQCRNRLDTLKKKYKKEKAKFPDS-DGGDCKWVYFKKMD 255
                         *************************************556789**************************96.666669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-20170257No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDGIEDDASY HPNPYRIISH QRGYGYGYGY GYGYGYQNSP YSPLPVNAEY AHHHDEDEEQ  60
EQLEGDDEVD QSNSLQLGQK DGDEENGMDG GGDENGDEEE EVEEVEDNKQ ITYYATKTED  120
DLEWHPKKQK LKSLISTYEL APRVPAPSAA AAPVPSAPKP SSGGRNSLTD WTEHETFVLL  180
DAWGYRFLQH GRKSLRCEEW QQVSKMVARV SKIERTETQC RNRLDTLKKK YKKEKAKFPD  240
SDGGDCKWVY FKKMDELMNS PPQQVGISCG LDSGEYVFTN PGVYLNHANG LDEIRDSPEN  300
VESTGEEGSD GLQAKKRKGR SSGEASSFRL LADSIQKFSK IYEKIENSKR QQMMELEKMR  360
MDFHKDLETQ KRQMFGNLQF EISKLEQIND ENDDSAENGM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G171600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150667.10.0hypothetical protein PHAVU_005G171600g
TrEMBLV7C1A50.0V7C1A5_PHAVU; Uncharacterized protein
STRINGXP_007150667.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-60Trihelix family protein