PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.005G112500.1 | ||||||||
Common Name | PHAVU_005G112500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25870.5 Da PI: 6.5327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 81 | 127 | 4 | 53 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 a+ rE+ RRd++N++f eL ++l + + +K +K++iL Av+ + + Phvul.005G112500.1 81 AKACREKLRRDKLNERFLELSSILEPG---RPPKTDKVAILSDAVRAVVQ 127 6778**********************8...89*************87655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.366 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-8 | 81 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.81E-7 | 81 | 123 | No hit | No description |
SMART | SM00353 | 3.2E-7 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-13 | 83 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 83 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 5.4E-4 | 143 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MDMNSSGAAS GWLYDYGFDI PVAGADFMAA ADSGGFSWGP QNHTLKAPSN TSLDMEYSLD 60 STVLENGPSK RLRTESCASG AKACREKLRR DKLNERFLEL SSILEPGRPP KTDKVAILSD 120 AVRAVVQLRN EAERLKEMND ELQGKVKELK AEKNELRDEK NMLKEEKEKL EQQVKLTNVM 180 QHSFLPQAPA AKEQVGSHKL IPFIGYPGIA MWQFMPPAAV DTSKDHLLRP PVA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.005G112500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT097126 | 0.0 | BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149945.1 | 1e-173 | hypothetical protein PHAVU_005G112500g | ||||
Swissprot | Q9FH37 | 3e-74 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | V7BVF6 | 1e-172 | V7BVF6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149945.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14916 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-65 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.005G112500.1 |
Entrez Gene | 18630760 |