PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G095000.1
Common NamePHAVU_005G095000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 301aa    MW: 34005.9 Da    PI: 10.3301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G095000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.51.3e-1628118186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                         +W+++ + +Liea  e++ +l+rg+l++ +W+ev++ +      +    +r+ +qCk++++ l+k+yk +k++ ++   +s +t+p+f++l
  Phvul.005G095000.1  28 CWSEEATFTLIEAWGERHLELNRGNLRQRHWQEVADTVnarhghAGARSRRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATTWPFFRRL 117
                         7*************************************9888755556689*********************99985.778889*****99 PP

            trihelix  86 e 86 
                         e
  Phvul.005G095000.1 118 E 118
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2626119No hitNo description
SMARTSM005950.004636125IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDSIAGAPPH TANPPPSRPS PFPGREDCWS EEATFTLIEA WGERHLELNR GNLRQRHWQE  60
VADTVNARHG HAGARSRRTD VQCKNRIDTL KKKYKIEKAR VSDSGDSATT WPFFRRLEFL  120
VGDNFPAKKP SPPEATSGDR RSTPPAKSPS WALIPVGPRS RSQKRPTPAA PAAESVADSY  180
FRRNFSVFAA AAAAAAEADS DNSNGSKWSS GSEKREKKKR ERDWEFGYRE VAEALERFGE  240
IYERVEEAKQ RQMVELEKQR MQFAKDLETQ RMKLFMETQL HLQKMNRSNS KRSSATDSVS  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G095000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149737.10.0hypothetical protein PHAVU_005G095000g
TrEMBLV7BYQ60.0V7BYQ6_PHAVU; Uncharacterized protein
STRINGXP_007149737.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-69sequence-specific DNA binding transcription factors