PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G055400.1 | ||||||||
Common Name | PHAVU_005G055400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 33877.6 Da PI: 8.1941 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.1e-51 | 11 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deelv++yL kk+++++ l + +vd++k+ePwd+p+++ + k+wyf+++rd+kyatg r+nrat+sgyWkatgkd++ Phvul.005G055400.1 11 LPPGFRFHPRDEELVCDYLMKKLTHNDSLL---MIDVDLNKCEPWDIPETACVGGKDWYFYTQRDRKYATGLRTNRATASGYWKATGKDRP 98 79**********************999544...789************7777799************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +l+ kg+lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Phvul.005G055400.1 99 ILR-KGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRI 134 **9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-60 | 2 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.002 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKLTHNDSLL MIDVDLNKCE PWDIPETACV 60 GGKDWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRPIL RKGTLVGMRK TLVFYQGRAP 120 KGRKTEWVMH EFRIEGPHGP PKVSSSKEDW VLCRVFYKSR EVSAKPSMGS CYEDTGSSSL 180 PALMDSYISF DQTQAHADEF EQVPCFSIFS QNQANPIFNH MTTMEPKLPA TTYGGAPNLG 240 YCLDPLSCDR KVLKAVLSQI TKMERNPLNQ SLKGSTSFGE GSSESYLSEV GMPHMWNNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 7 | 161 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G055400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF402602 | 0.0 | AF402602.1 Phaseolus vulgaris NAC domain protein NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149262.1 | 0.0 | hypothetical protein PHAVU_005G055400g | ||||
Swissprot | Q84TE6 | 1e-124 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | Q93XA7 | 0.0 | Q93XA7_PHAVU; NAC domain protein NAC1 | ||||
STRING | XP_007149262.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-119 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G055400.1 |
Entrez Gene | 18630168 |