PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G126000.1 | ||||||||
Common Name | PHAVU_004G126000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 26447.2 Da PI: 8.9259 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2e-11 | 82 | 125 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE+ l++++ +G g Wk+I+ +++ ++ + q+ s+ qky Phvul.004G126000.1 82 TWTMEEHRLFLEGLYIYGRGYWKKISYYIQ-TKDATQVASHAQKY 125 7*****************************.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-8 | 72 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.453 | 75 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-14 | 77 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-6 | 79 | 128 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.2E-13 | 79 | 128 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 82 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.54E-7 | 82 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEVLSEEWWN ETNALFLEVF PNIQTQTATS DKINGPPIML SLPETTLLSG HPHQDIVEAP 60 LVLAPSQTCR IQVQSNKRKR ITWTMEEHRL FLEGLYIYGR GYWKKISYYI QTKDATQVAS 120 HAQKYFMRNN ISQEKKKRKS IHDMVLSQPI QVHFNPPINM SHPEHLNPVN MSHQIPPITE 180 MMQSNHINHI NHHPQYNGIH QMMESNSINN VVYSTQFHQM QSRWR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G126000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152391.1 | 1e-168 | hypothetical protein PHAVU_004G126000g | ||||
TrEMBL | V7C528 | 1e-167 | V7C528_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152391.1 | 1e-167 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G126000.1 |
Entrez Gene | 18632859 |