PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G064700.1
Common NamePHAVU_004G064700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 276aa    MW: 29897 Da    PI: 8.4859
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G064700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.12.1e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  Phvul.004G064700.1   4 SCNGCRVLRKGCSEDCSIRPCLewiknPESQANATVFLAKFYGRAGLLNLINAGPQQLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l++e
  Phvul.004G064700.1  95 LCQAAVEAVLRGE 107
                         ******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.873109IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLEWIKN PESQANATVF LAKFYGRAGL LNLINAGPQQ  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLRGESVT PITSEVAANG  120
RAPPLKAYDI RHVSKDENSA NRSQKGKSRI RVKRTGGDVV IKPKGSEGIG FGPVEPETKQ  180
TRSHESGLSH LSEAAAILEG ESKESESVVS VETGNLFGET KMSDRIDESG NEIGLELRLG  240
FEPVSRVHHM VPMKKRRIEV KSSGDSMELG LESSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G064700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151649.10.0hypothetical protein PHAVU_004G064700g
SwissprotQ9M8861e-102LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV7C2R40.0V7C2R4_PHAVU; Uncharacterized protein
STRINGXP_007151649.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-99LOB domain-containing protein 41