PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G257100.1
Common NamePHAVU_003G257100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 373aa    MW: 41258.6 Da    PI: 8.3567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G257100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-052823201154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++++L++l+ +      +K s a++L +A+ YI+ L
  Phvul.003G257100.1 282 IRKEKLGDRIQTLQRLVAPF-----GKTSTASVLSEAIGYIHFL 320
                         57788999*********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.566271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-11281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-5281325No hitNo description
Gene3DG3DSA:4.10.280.101.7E-8282342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEFASFHLQH QLQEESAQCI TSATPPPDSK PSITTSQSWI PSNMYNGCNS GFLTESFTNS  60
RELQHKHAMT DSLRISTRQA FGFHNGKSFS QQPVSDLFPA RMRGEMINTS MKAVEESCSL  120
IPVHEPRYPP SFLSSLGVTG PEFVPAENVF HNNKSIEGRT QSKRYNNFGD ASLISNLPTL  180
DMTSSLVSCS LGLNPKMFDL HTSYSESCEI QPCYDTFGLN ESIALCHSDM HGSDNSPSNS  240
SKISSFISEV ATTKRPSNCS LPKESEAKAK KSRPSSCPPL KIRKEKLGDR IQTLQRLVAP  300
FGKTSTASVL SEAIGYIHFL HQQIQTLSTP YMKSTQSNRM MQLGSKELKT DLRSRGLCLV  360
PFSYASFIHR CV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G257100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156084.10.0hypothetical protein PHAVU_003G257100g
TrEMBLV7CFE80.0V7CFE8_PHAVU; Uncharacterized protein
STRINGXP_007156084.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-32bHLH family protein