PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G236200.1 | ||||||||
Common Name | PHAVU_003G236200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25507.2 Da PI: 8.4321 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.2 | 8.2e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++ Phvul.003G236200.1 2 SCNGCRVLRKGCSESCVLRPCLqwietAEAQGHATVFVAKFFGRADLMSFVSNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92 6*********************9999777889*********************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Phvul.003G236200.1 93 VCQAAVETVLR 103 *****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.816 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCVLR PCLQWIETAE AQGHATVFVA KFFGRADLMS FVSNVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRTM PELMDLTSPA 120 AAADETSEVA CSDIWRIRHP NPTCGFTNSR SHNKVSSASK RKRLEEPAKL QAAPNLDLRL 180 TPIFLQKKVE NRRPVSPSMT SEESGTTTAC LESKFGDQWG HSGDRKVLNL FI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G236200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155842.1 | 1e-173 | hypothetical protein PHAVU_003G236200g | ||||
Swissprot | Q9SZE8 | 4e-85 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | V7CG06 | 1e-171 | V7CG06_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155842.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-87 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G236200.1 |
Entrez Gene | 18635844 |