PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G192000.1
Common NamePHAVU_003G192000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 645aa    MW: 69891.4 Da    PI: 7.1363
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G192000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.47.9e-30282341159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  Phvul.003G192000.1 282 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCVDDMSILITTYEGTHNHT 341
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-31267343IPR003657WRKY domain
SuperFamilySSF1182905.49E-27275343IPR003657WRKY domain
PROSITE profilePS5081127.749277343IPR003657WRKY domain
SMARTSM007741.8E-35282342IPR003657WRKY domain
PfamPF031064.2E-26283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MQALFSPVFM LIYKEGLCSR TQKKKPDQEG TRAYEERKFP HMELASERSG DGGSGLKEEN  60
RSDEYTVGDA EDSPHKQEII VQEAPAANTE RSKQEAGPST SADKKEEVDD QLESTKAEMG  120
VVREENQRLK RSLNKIMSEY RTLEMQFQDV LKQGTKRNKG NDNQEDTLEE SDLVSLSLGR  180
VPNNQRNDEK IKVCKKLKDD EGFNEDLTLG LCKSKSGSTT EALPNPIPEN SSEVPKEEAG  240
ETWPPSKETQ KTIRDTEDEV AQQNPMKKPR VCVRARCDTP TMNDGCQWRK YGQKIAKGNP  300
CPRAYYRCTI APSCPVRKQV QRCVDDMSIL ITTYEGTHNH TLPPSATAMA STTSAAASML  360
LSGSSTSHSA STPSTTAATS ATNLHGLNFY LSDGSKPRQL YLSNPALSSS PSHPTITLDL  420
TSHPASSSSS PFVRFSSNYN QPRYPSSSSL SFSSSSEINA LSWSNGFLNN NNTIQPPYNT  480
RNILGNVNFG RQQVENIYQS YMQKNNSNIP NVPQGGVPAD TISAATKVIT ADPTFQSALA  540
AALTSFIGGG VRGNQGGNSV GESPSLGQKM KWGEVFPASN NSSSTLPCST SKVNGCASSF  600
LNKTPANNTQ TKSLMFLPPS SLPFSTPKSA SASASPADNS DTTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-212823431777Probable WRKY transcription factor 4
2ayd_A6e-21270344275WRKY transcription factor 1
2lex_A8e-212823431777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G192000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155330.10.0hypothetical protein PHAVU_003G192000g
TrEMBLV7CB090.0V7CB09_PHAVU; Uncharacterized protein
STRINGXP_007155330.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-67WRKY DNA-binding protein 72