PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G181900.1
Common NamePHAVU_003G181900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 533aa    MW: 58497.8 Da    PI: 8.0923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G181900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17232281255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Phvul.003G181900.1 232 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 281
                         889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-24227303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-19228301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.653230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-15232285No hitNo description
PfamPF000104.7E-15232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MTANGGSCLK THDFLQPLER LETKGSAKEE ATDEISWVVE KAGPSVEHLL PGGIGTYSIN  60
HISYVNNNNN NNNQRLPKAE TSLFVRPATS TDRNDENSNC SSYTTSSGFT LWEDSSAGKR  120
DKTGKENNSG DKPSIGECAA TKLGQWTSTE RTSQSFCTNH HDSFSSRSSS QTTGQKSQSF  180
IEMMKSARDS AQDEALENEE TFFLKKEPSN NQRDLTVKVD GKSTDQKPNT PRSKHSATEQ  240
RRRSKINDRF QMLRELIPHS DQKRDKASFL LEVIEYIHFL QEKVHKYEGS FQGWSNEQEK  300
LMPWQRNNDK PAESFQHRGT DNGSSPSPTL LFASKNEEKN ISISPTIPGS TQNVESGLST  360
PTTSKTMDHQ AGIMNKAFPI PISSQLNFFS PAQMSGPGGL VSQLAHRPGS DAENKYQPSV  420
ECQTMAATSE KLKEKELAIE GGAISISSVY SKGLLHTLTH ALQSSGVDLS QASISVQIEL  480
GKQANIRPTI PVSVCSAKDG EVPSNNQKVM RSRVASSGKS DQAIKKLKIC RN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G181900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155200.10.0hypothetical protein PHAVU_003G181900g
TrEMBLV7CAN80.0V7CAN8_PHAVU; Uncharacterized protein
STRINGXP_007155200.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-104bHLH family protein