PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G069000.1
Common NamePHAVU_003G069000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 405aa    MW: 45576.8 Da    PI: 9.6971
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G069000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.4e-1569128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Phvul.003G069000.1  69 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNDEEAAARAYDLAALKYWG 128
                         789******************888855566447*************************98 PP
2AP252.31.4e-16171222155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Phvul.003G069000.1 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-1169128IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1669138IPR016177DNA-binding domain
SMARTSM003804.6E-2570142IPR001471AP2/ERF domain
PROSITE profilePS5103219.55970136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-1570137IPR001471AP2/ERF domain
PRINTSPR003673.0E-57182IPR001471AP2/ERF domain
PfamPF008475.1E-12171222IPR001471AP2/ERF domain
CDDcd000182.29E-25171232No hitNo description
SuperFamilySSF541716.54E-18171232IPR016177DNA-binding domain
PROSITE profilePS5103218.953172230IPR001471AP2/ERF domain
SMARTSM003802.7E-26172236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18172231IPR001471AP2/ERF domain
PRINTSPR003673.0E-5212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MELAPVKSEL SPRSHRLLVI DGSEVIATKC VKRRRRGSSM SVLGGNEQQG EKLEEHKQLG  60
TATTVKRSSR FRGVSRHRWT GRFEAHLWDK GTWNPTQKKK GKQVYLGAYN DEEAAARAYD  120
LAALKYWGTS TFTNFPVSDY DKEIEIMKTV TKEEYLASLR RRSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSTYIRWLRP  240
GTHPIASHDQ KPSTDPQPFA TSKSMQTRGN IDVSNSNMHS FSSAELDSTK KQDFSKYINP  300
LSPCNKPSSP TALGLLLKST VFRELMQRNL NSSSEEAEEV ELKYPQEGND ANGGIYYSDN  360
TSNSYFCSSL INRLPNLESP EETSLPVYHG TVQSGWSSSF NMSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G069000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931680.0BT093168.1 Soybean clone JCVI-FLGm-24O15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153839.10.0hypothetical protein PHAVU_003G069000g
TrEMBLV7C8Z60.0V7C8Z6_PHAVU; Uncharacterized protein
STRINGXP_007153839.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.11e-71AP2 family protein