PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G060700.1 | ||||||||
Common Name | PHAVU_003G060700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 481aa MW: 54048.3 Da PI: 8.7815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 296 | 339 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR++i++++++Lr+l+Pk +K++ a+iL Av+YIk+Lq Phvul.003G060700.1 296 VTERNRRKKIKNGLFTLRSLVPKI-----TKMDRAAILADAVDYIKELQ 339 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.7E-14 | 10 | 148 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 14.627 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 289 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.39E-12 | 291 | 341 | No hit | No description |
SMART | SM00353 | 8.8E-14 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-11 | 296 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-16 | 296 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00289 | 409 | 471 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MSGLGVVEWL RPLVETNIWD YVVVWKYGDD PTRFIEWIGC CCRGSCSVNL GVMSKEEKGE 60 VCHLAPICRD KYLQHHVRTK ACEALAQLPF ALSLYSGVHG EVAISQQSRW LTKDSIGTQV 120 LIPIVGGLIE LFTEKLIPMD MNIIELITAH GCVSLKQEAI SAQSYTCLNI IEHLPLTEQY 180 SHRWLPHMSA TLTPSIHQPA TKQCTSHPSI EGPPSGSNPS IEEPSFDSKF VGLIPDEHLK 240 QSAKMSPIPK TKMSKYNKTS GKQQRGLSSH CSDGEEDKSK LVKEPQKEGY QAKNLVTERN 300 RRKKIKNGLF TLRSLVPKIT KMDRAAILAD AVDYIKELQT QMKELKDEVR ALEVQDREKN 360 TPQPRKAAVN EQEGTRSSTL NQSSSDCTKK MPMEKVQVEV HHISKKDFLV KLYCEQKQGR 420 FSKLMEAIHS IGLQVASANI MTFDAKVLNI LTVKATNKDI HPTKLKEYLI QKTSDDRQSR 480 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G060700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153735.1 | 0.0 | hypothetical protein PHAVU_003G060700g | ||||
TrEMBL | V7C6I7 | 0.0 | V7C6I7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153735.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12265 | 30 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 2e-74 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G060700.1 |
Entrez Gene | 18634040 |