PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G026800.1
Common NamePHAVU_003G026800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 361aa    MW: 40317.3 Da    PI: 7.1618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G026800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14169215354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Phvul.003G026800.1 169 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 215
                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-15170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-15170222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-5179218No hitNo description
CDDcd048734.98E-6253330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MKKELDDQGQ SSSQPINNNN NNIQTYQEHL LFQEQMQQQQ QQQNTDIFGG SRGLMFPEIT  60
MQPWSMPPVH SFNPGPVHYN NNTNPVRDHH DQAFIVPPTP SPYSSFFSRR VPSLQFAYPS  120
SDHHHLRIIS DTLGPMVQPG SAAPFGLQAE LGKMTAQEIM EAKALAASKS HSEAERRRRE  180
RINNHLAKLR SLLPNTTKTD KASLLAEVIQ HVKELKRQTS HIAETSAVPT EADELTVDAA  240
NEDGKFVIKA SMCCEDRSDL LPDLIKTLKA LKLRTLKAEI TSVGGRVKNV LVIAGDEGTP  300
NTNEEQSMQQ QQQQRQYCIT SIQETLKAVM EKTAAGDESA SANVKRQRTN NINFLEQRSL  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G026800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153337.10.0hypothetical protein PHAVU_003G026800g
RefseqXP_007153338.10.0hypothetical protein PHAVU_003G026800g
SwissprotQ9S7Y11e-106BH030_ARATH; Transcription factor bHLH30
TrEMBLV7C5840.0V7C584_PHAVU; Uncharacterized protein
STRINGXP_007153337.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]