PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G011300.1 | ||||||||
Common Name | PHAVU_003G011300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | B3 | ||||||||
Protein Properties | Length: 436aa MW: 49120.4 Da PI: 8.9162 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 7 | 96 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +l+ s + +s++l++p +f++++g + s+ tl+ ++g W++ l +k ++++++ +GW++Fv+ + +g f+vF+++g+s+f v+ Phvul.003G011300.1 7 HKLVLSTTIQSRQLRIPDTFLRKYGTQ--LSTIATLTVPDGSIWRIGL--KKADNKIWFVDGWQDFVQRYSVGVGYFLVFMYEGNSSF--IVH 93 5667788999999***********966..9999***************..*************************************9..999 PP EE- CS B3 96 vfr 98 +f+ Phvul.003G011300.1 94 IFN 96 986 PP | |||||||
2 | B3 | 61.6 | 1.3e-19 | 301 | 392 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l +++e el Phvul.003G011300.1 301 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVELQ 386 78899******************876743...59999999********665555..66*************************99****** PP EEEE-S CS B3 94 vkvfrk 99 v+vfr Phvul.003G011300.1 387 VTVFRV 392 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-21 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-18 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.211 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-15 | 8 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-24 | 290 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-24 | 291 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.26E-22 | 296 | 391 | No hit | No description |
SMART | SM01019 | 5.2E-19 | 298 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.269 | 298 | 393 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-17 | 301 | 392 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MARPCFHKLV LSTTIQSRQL RIPDTFLRKY GTQLSTIATL TVPDGSIWRI GLKKADNKIW 60 FVDGWQDFVQ RYSVGVGYFL VFMYEGNSSF IVHIFNLSTA ELNYQSAIRN HIEGPCYANY 120 NHIFEEMEDV DSIDLSDLSP AYLASGAMQN KGFAGSGDQL TPGKSHTPAL QNLFNGGSKL 180 NRVNWGDGGS AYSSKAANSQ GTQSTRDIGV QFNAVEFKRS TEELKLRYSN EESVNKTAKK 240 KRKSESQGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKA FEPTNPFCRV 300 VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE 360 FTVENNLGEG DVCVFELLRT KEVELQVTVF RVTEDAGLLH TPLAVQQQSQ NMSHTKLLNP 420 HLQHRVSSTV KLIRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-71 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-71 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G011300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094686 | 0.0 | BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153153.1 | 0.0 | hypothetical protein PHAVU_003G011300g | ||||
Swissprot | Q8L3W1 | 1e-130 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | V7C4R2 | 0.0 | V7C4R2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153153.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-129 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G011300.1 |
Entrez Gene | 18633530 |
Publications ? help Back to Top | |||
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