PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 243aa MW: 26154.9 Da PI: 4.5905

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G310200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.5e-19	44	94	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Phvul.002G310200.1 44 PVYRGVRMRS-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 94 68***998.******854...59********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.2E-13	44	94	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-21	45	103	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.064	45	102	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-32	45	103	IPR001471	AP2/ERF domain
SMART	SM00380	4.4E-37	45	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-10	46	57	IPR001471	AP2/ERF domain
CDD	cd00018	1.21E-31	46	104	No hit	No description
PRINTS	PR00367	1.8E-10	68	84	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAEQPSSEAS SSASTGKHSS SEAHLEGPDQ KRPKQARDSS SKHPVYRGVR MRSWGKWVSE 60 IREPRKKNRI WLGTFATAEM AARAHDVAAL AIKGNSAILN FPELAGSLPR PDSNSPRDVQ 120 AAAAKAAAME VMDPPTTPSW TLSQCSSSSS LAGSSSSGEA STAEDLGEIV ELPSLGTSLE 180 IPERSEEVVF VEPVDGWLYS EAWCDGIYDE RECGGYFIGD EISMRESESM ILCGFEGSLW 240 QH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	36	102	5	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	34	PDQKRPKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G310200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by cold stress. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-165	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007160302.1	1e-177	hypothetical protein PHAVU_002G310200g
Swissprot	Q39127	2e-57	TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBL	V7CTS7	1e-175	V7CTS7_PHAVU; Uncharacterized protein
STRING	XP_007160302.1	1e-176	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	2e-53	ERF family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G310200.1
Entrez Gene	18639662

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]