PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G271700.1
Common NamePHAVU_002G271700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 336aa    MW: 37456.4 Da    PI: 4.4764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G271700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.51e-4361331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l pGfrF+P+  elvv++Lk+kv gkk+    vi+e+diyk+ PwdL  k +++++e ewyfF++ +kky +g+r +r+t+ gyWkatg+d
  Phvul.002G271700.1   6 LVPGFRFNPSGVELVVYFLKNKVMGKKFFG-GVITELDIYKYAPWDLSdKsCLRTGELEWYFFCPLEKKYGSGSRMKRSTEIGYWKATGND 95 
                         579************************888.89**************85347788888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + v + ++++vg+ +tLvf+ g++pkg++tdWvmhe rl
  Phvul.002G271700.1  96 RVVQH-NNRTVGMIRTLVFHLGKSPKGKRTDWVMHEHRL 133
                         *9999.999***************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-544156IPR003441NAC domain
PROSITE profilePS5100550.4566156IPR003441NAC domain
PfamPF023652.9E-218133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAVTKLVPGF RFNPSGVELV VYFLKNKVMG KKFFGGVITE LDIYKYAPWD LSDKSCLRTG  60
ELEWYFFCPL EKKYGSGSRM KRSTEIGYWK ATGNDRVVQH NNRTVGMIRT LVFHLGKSPK  120
GKRTDWVMHE HRLEDKDLAD KGIVQDSYVV CKVFQKDGVG PRNGAQYARP FNEEEWNDVE  180
LEIPFSASIA PVPILPMISD ASVRKDNPLP ASGCTSCLSR SMPSPGTADP SDPNDQAVNN  240
DDEDILRMLD IFKDGDKLFE EDNNDLENIA EGVPLLDELF VGLKDYLASS LAGVSSCQNA  300
EFNTNGMVTT GDVDDLDFLE LTDLDMPLFL PNTQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-41615720169NAC domain-containing protein 19
3swm_B5e-41615720169NAC domain-containing protein 19
3swm_C5e-41615720169NAC domain-containing protein 19
3swm_D5e-41615720169NAC domain-containing protein 19
3swp_A5e-41615720169NAC domain-containing protein 19
3swp_B5e-41615720169NAC domain-containing protein 19
3swp_C5e-41615720169NAC domain-containing protein 19
3swp_D5e-41615720169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G271700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-122AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159836.10.0hypothetical protein PHAVU_002G271700g
TrEMBLV7CRD60.0V7CRD6_PHAVU; Uncharacterized protein
STRINGXP_007159836.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-82NAC domain containing protein 82