PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G271000.1
Common NamePHAVU_002G271000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 282aa    MW: 31114.9 Da    PI: 6.2657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G271000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08151191954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Phvul.002G271000.1 151 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 191
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-12148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-11148196No hitNo description
SMARTSM003531.3E-12148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-14148201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6152191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDTNQNTTTS VFTNVNTTWN LEKMETNEQQ HHHHDHDHII LQVQDPLASG IWPNNYPHNH  60
NPNLLQMHQT PPSTTSSIVP PPSSSSSGFL GDILGVHSME EDEEPEEELG AMKEMMYKIA  120
AMQPVDIDPA TIRKPKRRNV RISDDPQSVA ARHRRERISE KIRILQRLVP GGTKMDTASM  180
LDEAIRYVKF LKRQIRLLQS IPHPSQPPQC IGFATTNANT LLLAPSCDWS FAPNVLLSST  240
AVTAATASSS SLDMPGGLGF DGRGHACDGS SSFNQHEVIS E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G271000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1923740.0KC192374.1 Phaseolus vulgaris cultivar BAT93 indehiscent-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159828.10.0hypothetical protein PHAVU_002G271000g
TrEMBLV7CNP80.0V7CNP8_PHAVU; Uncharacterized protein
STRINGXP_007159828.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-47bHLH family protein