PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G256900.1
Common NamePHAVU_002G256900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 334aa    MW: 37050.9 Da    PI: 7.943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G256900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-07121142223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C+ Cgk F+r  nL+ H+r H
  Phvul.002G256900.1 121 FCEVCGKGFTRDANLRMHMRAH 142
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.21E-6119144No hitNo description
PROSITE profilePS5015712.508120147IPR007087Zinc finger, C2H2
SMARTSM003550.0018120142IPR015880Zinc finger, C2H2-like
PfamPF128747.5E-4121140No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-7122145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035526167200IPR015880Zinc finger, C2H2-like
SMARTSM00355280205226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPNTTQHFPN KNNINFPNDS LHVSLRNLSQ LSTRMDSLQT FVSQSIQSHT LLTHHQMNIV  60
SNEILTAIRH VITNGAALVA ASENVLPLSD TPTSDSPNLT SDETSVVELD AMELLVQHLH  120
FCEVCGKGFT RDANLRMHMR AHGDEFKTPD ALVSRARGET RTKATRFSCP FEGCNRNKTH  180
KKFRPLKSVL CLRNHFKRSH CPKTLSCERC RKKSFAVLSD LRSHVKQCRG EATWKCSCGT  240
TFSRKDKLFG HVALFEGHLP MLEEEKETSV VAAAAAAKGL VKENDGGLDG LPEGFFDGLD  300
EFGFGSSEIT SSPEETWPAF RLPTNNLNGN SHF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G256900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159664.10.0hypothetical protein PHAVU_002G256900g
SwissprotQ943I63e-67STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLV7CQP40.0V7CQP4_PHAVU; Uncharacterized protein
STRINGXP_007159664.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.34e-68C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]