PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G256500.1
Common NamePHAVU_002G256500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CAMTA
Protein Properties Length: 1106aa    MW: 125217 Da    PI: 5.683
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G256500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.39.6e-56201362118
                CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         ++ ++rwl++ ei+aiL n++k++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+ee++
  Phvul.002G256500.1  20 VEAQHRWLRPAEICAILSNYTKFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDE 110
                         5679*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+ywlLeeel++ivlvhy++vk
  Phvul.002G256500.1 111 NFQRRTYWLLEEELSNIVLVHYRQVK 136
                         ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.13115141IPR005559CG-1 DNA-binding domain
SMARTSM010763.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-4821134IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.67E-16522607IPR014756Immunoglobulin E-set
PfamPF018331.9E-5522598IPR002909IPT domain
Gene3DG3DSA:2.60.40.105.0E-6524596IPR013783Immunoglobulin-like fold
SuperFamilySSF484036.84E-18701817IPR020683Ankyrin repeat-containing domain
CDDcd002045.21E-15704816No hitNo description
Gene3DG3DSA:1.25.40.203.2E-17706819IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.882707816IPR020683Ankyrin repeat-containing domain
PfamPF127966.2E-7729819IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.992757789IPR002110Ankyrin repeat
SuperFamilySSF525401.35E-7925979IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.11929951IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021931950IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.517931959IPR000048IQ motif, EF-hand binding site
SMARTSM000150.038952974IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.62953977IPR000048IQ motif, EF-hand binding site
PfamPF006129.8E-4955972IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MAEARHYVPP SQLDIEQIIV EAQHRWLRPA EICAILSNYT KFRIAPEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEEDE NFQRRTYWLL  120
EEELSNIVLV HYRQVKGTKS NYTCAKETEE SLPYAQQTDK IMVKAEMDTS FSSTLRPNSY  180
QVPSQTTDTS MNSAQLSEYE ETESAFNSHA SSEFYSFLEL QRPVKKIIDQ PADSYSPQPL  240
INEQKKLPVI AEVNHISLTQ DRKIIDIHNV GLTYESPKPL GFSSWEDILG NNGESQHVPF  300
QPLFPEMQPD NMRVNSNFCQ GDDIIVPHLT TSIAQLHDNG SIIQAEGSWQ GYSVDSLRMS  360
TWPIDSVHSS SACEVSCSKC EHEVNEVDFQ KSLEQSLLHP HKQNKVLMLN DPQEILLNTK  420
EEPKSDFEAN RTLDGIEDTR FAFKRTLLDG FPAEEGLKKL DSFYQWMSKE LGDVEESNKP  480
STSGAYWDTV ESEVGSTTIP SQGHLDTYVL DPSVSNDQLF SIIDYSPGWA FEGSKTKIII  540
SGRFLRSQQE AELCKWSCMF GEVEVPAVIL TKDVLCCHTP PHKAGRVPFY VTCSNRLACS  600
EVREFDFQVN CTQEVNTAGD DRASTLSTFS RRFGELLYLG HAFPQNSYSI SGNEKSQLRS  660
KISSLLRGED DVWDKLLELT LQKEFSPEDL QEHLLQNLLK DRLHAWLLQK IIDDGKGPNV  720
LDEGGQGVLH FAAALGYDWA LEPTIVAGVN VNFRDVNGWT ALHWAAFYGR ERTVAFLVSL  780
GAATGLVTDP CPEYPSGRPP ADLASANGHK GIAGYLSESY LSEQLTTLDL NKDVGESPGT  840
KVVQRIQNIA QVNDLDGLSY EQSLKDSLAA VCNATQAAAR IHQVFRMQSF QRKQLEEFGD  900
DKFGISDERA LSLVKMNGKS HKSGSRDEPV HAAAIRIQNK FRGWKGRKEF LMIRQRIVKI  960
QAHVRGHQVR KNCGKIIWTV GILEKVILRW RRKGSGLRGF KSEANSEVTM IQDITSPEED  1020
YDFLKEGRKQ TEQRLEKALA RVKSMVQYPE ARDQYRRVLN VVTEIQENQV KHDSSCNNSE  1080
ETRDFNNLTD LEALLEEDIF MPTAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G256500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159660.10.0hypothetical protein PHAVU_002G256500g
TrEMBLV7CNF60.0V7CNF6_PHAVU; Uncharacterized protein
STRINGXP_007159660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains