PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G253900.1
Common NamePHAVU_002G253900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family EIL
Protein Properties Length: 470aa    MW: 54098.9 Da    PI: 4.7607
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G253900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3398.49.4e-122283582353
                         XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 
                          lkkrmwkd++ll++lke++ ++  d+         +  +e+ rrkkmsraQD+iLkYM+k+mevcnaqGfvYgiipekgkpv+g+sdsLr
  Phvul.002G253900.1  28 QLKKRMWKDRILLQKLKENRPKEESDQ---------EAKQEACRRKKMSRAQDSILKYMVKIMEVCNAQGFVYGIIPEKGKPVTGSSDSLR 109
                         69*****************99843333.........3458*************************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHH CS
                EIN3  93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwge 183
                         +WWkekv+fd+n+p+a++k  +   +l+ ++ l  +++s+ h l++lqDTtl+SLLsalmqhc+ppqrrfple+g++pPWWPtG+e+wwge
  Phvul.002G253900.1 110 EWWKEKVKFDQNAPTALAKFMP---LLQIND-L--DPTSYMHLLNDLQDTTLSSLLSALMQHCMPPQRRFPLERGFAPPWWPTGTEAWWGE 194
                         *******************955...333333.3..589***************************************************** PP

                         HT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXX CS
                EIN3 184 lg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspk 273
                         +g l++++g+ppykkphdlkk+wkvs+L+avikh+sp+++++r+l+ qsk lqdkm+ak+++++++v+nqee++++             + 
  Phvul.002G253900.1 195 QGlLAQEHGPPPYKKPHDLKKVWKVSLLAAVIKHISPNLDKLRRLVTQSKTLQDKMTAKDTATWSKVMNQEEALLQLTN----------KC 275
                         **9999999***************************************************************9874222..........22 PP

                         XXXXXXXXXXXX....XXXXXX.XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
                EIN3 274 vtlsceqkedve....gkkeskikhvqavktta..gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                         +++s  +++++e    +   ++ + v + +  +     +++krk    +  ++ +k   + cq  ++++se+ ++f dkns+ ++e
  Phvul.002G253900.1 276 LKISLLDEDENEcessTSTSHEGSCVAELNGDSnlFGGIIEKRK-SVIDLDATTDK--LYACQYYHCPQSEMGMGFLDKNSRMNHE 358
                         33333333333311113333333334444433322235677777.67777777677..7***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.3E-11528266No hitNo description
Gene3DG3DSA:1.10.3180.102.9E-65142270IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.62E-56144269IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVEIHEHINP FDEENEEEEE EEEINYDQLK KRMWKDRILL QKLKENRPKE ESDQEAKQEA  60
CRRKKMSRAQ DSILKYMVKI MEVCNAQGFV YGIIPEKGKP VTGSSDSLRE WWKEKVKFDQ  120
NAPTALAKFM PLLQINDLDP TSYMHLLNDL QDTTLSSLLS ALMQHCMPPQ RRFPLERGFA  180
PPWWPTGTEA WWGEQGLLAQ EHGPPPYKKP HDLKKVWKVS LLAAVIKHIS PNLDKLRRLV  240
TQSKTLQDKM TAKDTATWSK VMNQEEALLQ LTNKCLKISL LDEDENECES STSTSHEGSC  300
VAELNGDSNL FGGIIEKRKS VIDLDATTDK LYACQYYHCP QSEMGMGFLD KNSRMNHESH  360
CGYRTSQNPT LLHDNVSNDT QIICEDDWMN MEVARANQND NDHLGDLNDQ LRDIVGKTPE  420
DYGSLWLNSL EDLELHTALD QIDMNLNRNS EQDTPQGQEI TSIWDLTYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-541422681126Protein ETHYLENE INSENSITIVE 3
4zds_B4e-541422681126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G253900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-154AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159632.10.0hypothetical protein PHAVU_002G253900g
SwissprotQ9LX161e-136EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLV7CRS50.0V7CRS5_PHAVU; Uncharacterized protein
STRINGXP_007159632.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-123EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]