PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G177100.1
Common NamePHAVU_002G177100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 580aa    MW: 65077.1 Da    PI: 4.8582
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G177100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.47.5e-24207260155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm v+ Lt+e+v+SHLQkYRl
  Phvul.002G177100.1 207 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMTVPWLTRENVASHLQKYRL 260
                         68*******************.9*******************************8 PP
2Response_reg79.79.9e-27271351109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l+k  y ev+++  + eal++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + 
  Phvul.002G177100.1  27 VLVVDDDPTWLRILEKMLKKCLY-EVTTCCLAIEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKG 115
                         89*********************.***************888889**********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ ++el++
  Phvul.002G177100.1 116 VQHGACDYLLKPIRMKELRN 135
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-4324162No hitNo description
SuperFamilySSF521723.7E-3524152IPR011006CheY-like superfamily
SMARTSM004481.6E-3125137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.57626141IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-2427136IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.28E-2928141No hitNo description
Gene3DG3DSA:1.10.10.602.1E-27205265IPR009057Homeodomain-like
SuperFamilySSF466899.68E-17205264IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-21207260IPR006447Myb domain, plants
PfamPF002491.1E-6209259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MTLLSNNMDN GCFSSPRHEA FPAGLRVLVV DDDPTWLRIL EKMLKKCLYE VTTCCLAIEA  60
LKKLRERKDA YDIVISDVNM PDMDGFKLLE QVGLEMDLPV IMMSVDGETS RVMKGVQHGA  120
CDYLLKPIRM KELRNIWQHV FRKRMHEARD FESHEGFEAL HLMMNGSDQS DDGNLFAVEE  180
ITSIKKRKDA DNKHDDKEFG DHSPSKKARV VWSVDLHQKF VKAVNQIGFD KVGPKKILDL  240
MTVPWLTREN VASHLQKYRL YLSRLQKEND QKSSSSGIKH SDSPSKDPGS FSLLNTANNK  300
QQNDVAIDSF SHSDGSLLFQ MDAPSHEGDL KGVVSEPTTE KSRTPPKSSQ MSLNQPFSSL  360
ESSEASHAVF DCTIPTRYSW GEFPKGPLKE EQKAIVQLED SFSQLPLNGT RQHIQVDQSQ  420
SIASINSNPS ITEEEVAPSL DIKPLYAGYK NDYVSPVSSI GSAVDTFPNQ SKSLIVSDES  480
SEPIFTSNLG LKTHGFDLDC ISDLDFYQRN LLLGGEAASA PLEDDLNFFL LQADWYNMNF  540
GQQNINMSEC YDPRLVAEAP SYFYDSSDYS SVDQSLFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16203265163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G177100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158728.10.0hypothetical protein PHAVU_002G177100g
SwissprotQ5N6V81e-130ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLV7CKM00.0V7CKM0_PHAVU; Uncharacterized protein
STRINGXP_007158728.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-114response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]