PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G155300.1
Common NamePHAVU_002G155300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 357aa    MW: 38917.3 Da    PI: 4.6608
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G155300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38.1e-36251152101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++ ++lisw+e+g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+++
  Phvul.002G155300.1  25 FLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGERT 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Phvul.002G155300.1 107 LLRDIQRRK 115
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3822114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.03E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1701.7E-4182207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTPLAVEQTG ESAPADLQRS IPTPFLTKTY QLVDDPSADD LISWNEDGTS FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGERTLLRD IQRRKILLVP  120
PTAAPSVVTA NTVTVAVAAP AIRAVSPTTS GDEQVLSSNS SPIAGNSNNT VHRTTSCTTA  180
PELSEENERL RKENMQLNQE LSQLKSLCNN IIALMTNYAS GFSRQQLESS TSAVRTVPVP  240
EGKALELLPA KHLSSADDAV HVGGAAGFVP CTTANAAEAE VPKLFGVSIG LKRCRTECEA  300
EQEGEEQNQM HTLALTQAQT QTQSSQEPDG GPDVKSEPLD GDESDDQDGR WLELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-272511429129Heat shock factor protein 1
5d5v_B2e-272511429129Heat shock factor protein 1
5d5v_D2e-272511429129Heat shock factor protein 1
5hdg_A1e-272511410110Heat shock factor protein 1
5hdn_A1e-272511410110Heat shock factor protein 1
5hdn_B1e-272511410110Heat shock factor protein 1
5hdn_C1e-272511410110Heat shock factor protein 1
5hdn_D1e-272511410110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G155300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158472.10.0hypothetical protein PHAVU_002G155300g
SwissprotQ9T0D31e-100HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV7CNG80.0V7CNG8_PHAVU; Uncharacterized protein
STRINGXP_007158472.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-95HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]