PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G039700.1 | ||||||||
Common Name | PHAVU_002G039700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB_related | ||||||||
Protein Properties | Length: 911aa MW: 101288 Da PI: 4.6126 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.9e-10 | 771 | 814 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W++++ e +++a+++lG++ ++ I + ++ +t+ q+k+++ k Phvul.002G039700.1 771 RGKWSKQDTEVFYEAIRELGTD-FSMIQQLFP-DKTRRQIKLKYKK 814 89********************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.65E-10 | 761 | 815 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 2.6E-25 | 766 | 848 | No hit | No description |
PROSITE profile | PS50090 | 6.086 | 766 | 816 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-6 | 767 | 814 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-9 | 770 | 818 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-6 | 773 | 814 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence Send to blast |
MDPFDDLLPV ASVERIRPGA KFVPKAKPKQ RRKEVPSSEK ATSSRDGLTG NECQNVVAST 60 LSVPAEESMG SIHHTQLEFP NSEREVPKQI SVEGDGAASV HDSTFTDADQ NSTYFLESAC 120 EADPTEFDGD SVTNFFSETN LNNGITQPVH PANAVETKLN NVTAPFTTCS NIDRMKEPPK 180 NGEGSFLDSN KCLELIDNSL QVGTELGFKS ASDNKVAIVQ TVDSNSNFGK EPELVSAEIE 240 LDPFSDILPD LPTRNVHKFK PKIKPRPRVG NMPASASANV MMEKSVELPT FSTTDFQSFQ 300 SSGILNQTTS LPLPTSEILT TNYLPSNFGD TSSNVPISED SKSLAAATPS QLDSLNAMLL 360 GDAVHNGTRD WPSAFGKSSG EATDIFCGLE SLDDFLAQAT TDTGKPALHS FNEKGAEENF 420 VAPACSSINS FGECDTTQVQ RCPEYHTPQD PVTFNEATIL NENDTHTNNR MSETEEIVDL 480 NPTYTRDDVF DYQSMKSGED PTSGILVHED LTNAADSSTL ADFLHANDSR EKEDANQRKK 540 DGTDSCSLRK NKRSSIAGEE DNGGKTLRQR RKLAASKPAN SSLNEDVEDD NDLDPPYHSN 600 EHELEENDDD CEVDHSSKKK RGSKSSQKKS VPKSGKTSQK RKKADDDVQK TKEPPKKFSH 660 STRRKKRCVD KALLEIPEDE LDPRTLPIKD IILLAEHRER QAKKEAMASN TTPSNQSAGD 720 FLHEAGAYNE QEFSGSEDGR DPYDDDQDNE RIESTSILYN YQTLMEKRPR RGKWSKQDTE 780 VFYEAIRELG TDFSMIQQLF PDKTRRQIKL KYKKEEREHY LRLRDAIHNR SKDHSHYKLL 840 IERLQQASTK EEEVVDLTEG TNEEVVEVAT TIKHDADVKA QEDSVAAESP EKSDDSEDES 900 LKWTEYKSLY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G039700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-162 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157057.1 | 0.0 | hypothetical protein PHAVU_002G039700g | ||||
TrEMBL | V7CJG9 | 0.0 | V7CJG9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157057.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 5e-45 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G039700.1 |
Entrez Gene | 18636882 |