PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G035100.1
Common NamePHAVU_002G035100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 178aa    MW: 19497.5 Da    PI: 4.7049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G035100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-171766255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++kGVr++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  Phvul.002G035100.1 17 KFKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYATPEAAAVAHDVAVYCLRR 66
                        89****998.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.67E-151751No hitNo description
SMARTSM003802.6E-261782IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-171769IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-251776IPR001471AP2/ERF domain
PROSITE profilePS5103220.851776IPR001471AP2/ERF domain
PfamPF008473.3E-101765IPR001471AP2/ERF domain
PRINTSPR003672.3E-81829IPR001471AP2/ERF domain
PRINTSPR003672.3E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSKTSALNAT SSSRENKFKG VRRRKWGKWV SEIRVPGTQE RLWLGTYATP EAAAVAHDVA  60
VYCLRRPSSL DKLNLPETLS SYSGQLREMS PRSVQKVASD VGMDVDARNI SEGRVSSGVA  120
QSEESEKKME VAVRAGGDDS DEFWWDGLEG DDSGTWNGSG EDCTERVSLN VSIEDYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G035100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156998.11e-126hypothetical protein PHAVU_002G035100g
SwissprotQ9C9I83e-38ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLV7CFL21e-125V7CFL2_PHAVU; Uncharacterized protein
STRINGXP_007156998.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-40ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]