PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G007500.1
Common NamePHAVU_002G007500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 349aa    MW: 38768.6 Da    PI: 6.6794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G007500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12176223355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A++Y+k+Lq
  Phvul.002G007500.1 176 QEHVIAERKRREKLSQKFIALSAVLPGL-----KKMDKASVLGDAIKYVKQLQ 223
                         6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.364173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-10176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16177236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-12178227No hitNo description
SMARTSM003535.5E-15179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMEIASTNYF PELEMEYLSF LDQYQMDSIA CPLDDFDFES FSGSPESNSS YQLNSESTPN  60
CFPAESPDLS VTPPRPTKRI KTFNTFKTCA SHLISQNVSA SPSSQIISFG HVNASPRGSH  120
QFHNLHGRPK IENPSSENMD FTDFVSQGSY EGKSFLSSDN RTNLVGITTR NPIQAQEHVI  180
AERKRREKLS QKFIALSAVL PGLKKMDKAS VLGDAIKYVK QLQERVQTLE EKTAKSTTGS  240
SVLLKRSILF ADDENSDSHC DHSLPEIEVR VTGKDVLIRT QSDKHSGRAA KILSELEKLH  300
FIVQSSSLLP FGNNNIDVTI IAQMKENYMA AKDLLGRLRQ ALKQVDGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12178232963Transcription factor MYC2
5gnj_B1e-12178232963Transcription factor MYC2
5gnj_E1e-12178232963Transcription factor MYC2
5gnj_F1e-12178232963Transcription factor MYC2
5gnj_G1e-12178232963Transcription factor MYC2
5gnj_I1e-12178232963Transcription factor MYC2
5gnj_M1e-12178232963Transcription factor MYC2
5gnj_N1e-12178232963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G007500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156673.10.0hypothetical protein PHAVU_002G007500g
TrEMBLV7CES70.0V7CES7_PHAVU; Uncharacterized protein
STRINGXP_007156673.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-58bHLH family protein