PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

LSD

Protein Properties

Length: 144aa MW: 15041.5 Da PI: 7.7286

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G006500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.2e-13	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Phvul.002G006500.1 27 CSGCRNLLLYPVGATSVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	43.7	4.5e-14	64	88	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL++ rGA++V+C++C+tV Phvul.002G006500.1 64 CGGCHTLLMFIRGATNVQCSCCHTV 88 ************************9 PP
3	zf-LSD1	35.4	1.8e-11	102	126	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+Y +GA+sV+Ca+C +V Phvul.002G006500.1 102 CGNCEMLLRYQYGARSVKCAICSFV 126 **********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.4E-13	24	54	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-10	27	51	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.0E-14	61	90	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.8E-12	64	88	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.4E-9	99	128	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-10	102	126	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MPVPLAPYPP PPPYTPPPNG AQSQVVCSGC RNLLLYPVGA TSVCCAVCNA VTTVPPPEMA 60 QLVCGGCHTL LMFIRGATNV QCSCCHTVNL ALEANQVAHV NCGNCEMLLR YQYGARSVKC 120 AICSFVTSVG TSTITTSEQK FST*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G006500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136945	1e-109	BT136945.1 Lotus japonicus clone JCVI-FLLj-13N7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156662.1	4e-99	hypothetical protein PHAVU_002G006500g
Swissprot	Q93ZB1	2e-71	LOL1_ARATH; Protein LOL1
TrEMBL	V7CIF4	9e-98	V7CIF4_PHAVU; Uncharacterized protein
STRING	XP_007156662.1	1e-98	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8187	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	4e-52	lsd one like 1

Link Out ? help Back to Top
Phytozome	Phvul.002G006500.1
Entrez Gene	18636538

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]