PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G231500.1
Common NamePHAVU_001G231500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 330aa    MW: 37163.6 Da    PI: 8.239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G231500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-10245287855
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Phvul.001G231500.1 245 AAKNRRERISERLKILQELVPNG-----SKVDMVTMLEKAISYVKFLQ 287
                         569*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-12237294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-11239291No hitNo description
SuperFamilySSF474591.03E-13240298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7247287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALAKHQKIP HNSNMSTKVP NCVFSETVET TSVTVHRVNE YHKSALEEED GSQTTHGLSN  60
DSGITHCDKG YTHKDTNYQL DEEESLINFK GYSNLMQAGE SLLSFQHNRL VPDNCYLKDN  120
IQKEYSVWEN NLHQSHNHWN QTSPRSTKDM RLVQDFNCFQ TASGYSSIVD NAKENQHGEG  180
SSGWLYSAPT IPNHRSLHEL GAREVVLQKR PSMGESMKAA KKQCSSGSKT PKHKSIPSKD  240
PQSVAAKNRR ERISERLKIL QELVPNGSKV DMVTMLEKAI SYVKFLQLQV KVLATDEFWP  300
AQGGKPPDIS QVKEVIDVIR SSQRERSLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G231500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-129AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163398.10.0hypothetical protein PHAVU_001G231500g
TrEMBLV7CYZ70.0V7CYZ7_PHAVU; Uncharacterized protein
STRINGXP_007163398.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-62RHD SIX-LIKE 1