PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G185100.1
Common NamePHAVU_001G185100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 451aa    MW: 51846.9 Da    PI: 6.7427
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G185100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.96.5e-24104202186
            trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                         +Wt+ +v++Li a+ +++++ +++             +kk++W++vs+ m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ +++++++
  Phvul.001G185100.1 104 KWTDTMVRLLIMAVYYIGDEAGSEGsdptkkkatgllQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVEN 194
                         7**************9998888643367778899999**********************************************55999**9 PP

            trihelix  79 cpyfdqle 86 
                           ++d ++
  Phvul.001G185100.1 195 QTLLDTMD 202
                         99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-21102226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEPNALGGGI FPNISSGLLG VEKLQNQQNP PHPLHHPQMV SYASHHDTDT HQQHPPQSIK  60
HGYNYSAAKT NKLQITLSDE DEAGFTAEDS GDPKRKMSPW HRMKWTDTMV RLLIMAVYYI  120
GDEAGSEGSD PTKKKATGLL QKKGKWKSVS RGMMEKGYYV SPQQCEDKFN DLNKRYKRVN  180
DILGKGTACR VVENQTLLDT MDLSPKMKEE VRKLLNSKHL FFREMCTYHN SCGHNNNCGT  240
SNAQQSSEAQ PQHQHQHQHQ QQRCLHSSEN GVGGLRMLKE DEDEDIEEED SEDFSDEEED  300
ESGEGGSRGM EEDENDVMRK RARKGGFGVL SSSSSVSCQV MMQQLNGEVS GVLQDVAKSA  360
WEKKHWMKKR VVQLEEQQVN YHMQAFELEK QRLKWERFSS KKEREMEKDK LQNERRRLEI  420
ERMLLLIRQK ELELVTVHQQ QQHQQQHSST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G185100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162836.10.0hypothetical protein PHAVU_001G185100g
RefseqXP_007162837.10.0hypothetical protein PHAVU_001G185100g
TrEMBLV7CZY20.0V7CZY2_PHAVU; Uncharacterized protein
STRINGXP_007162836.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-71sequence-specific DNA binding transcription factors