PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G184800.1
Common NamePHAVU_001G184800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25514.9 Da    PI: 7.5008
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G184800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.61.6e-1656109356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+ ++ ++q+e Le+ F+++ +++ e++ +L+++l L+ rq+ vWFqNrR+++k
  Phvul.001G184800.1  56 KKKRLISKQIELLERSFQEEIKLDPERKMKLSRELCLQPRQIAVWFQNRRTRWK 109
                         55567789*********************************************9 PP
2HD-ZIP_I/II113.11.8e-3655146192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekk+rl ++q++lLE+sF+ee kL+perK++l+reL lqprq+avWFqnrR R+ktkqlE+ y++Lk++yd +++e+++L++ev +L++ l
  Phvul.001G184800.1  55 EKKKRLISKQIELLERSFQEEIKLDPERKMKLSRELCLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDLISNEKQQLQEEVMKLKAML 145
                         69**************************************************************************************887 PP

         HD-ZIP_I/II  92 k 92 
                         +
  Phvul.001G184800.1 146 S 146
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1646113IPR009057Homeodomain-like
PROSITE profilePS5007116.55251111IPR001356Homeobox domain
SMARTSM003899.6E-1353115IPR001356Homeobox domain
CDDcd000864.16E-1354112No hitNo description
PfamPF000467.5E-1456109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-1859118IPR009057Homeodomain-like
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PfamPF021832.8E-8111145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDWHCTTKPF VPQPETLSFF YNNNNHPYPG VEVKQATMLE TGERSNPARD NGSKEKKKRL  60
ISKQIELLER SFQEEIKLDP ERKMKLSREL CLQPRQIAVW FQNRRTRWKT KQLEHLYDVL  120
KHQYDLISNE KQQLQEEVMK LKAMLSKEQG FGTQRLGGYP EITGEETVES TSEGLRGSNN  180
KAWGKSNIEQ VADEGLCSLS VEDYNTVSLP LCHWPIVPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRTRWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G184800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-129AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162833.11e-164hypothetical protein PHAVU_001G184800g
SwissprotQ9LZR01e-41ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLV7CXC11e-163V7CXC1_PHAVU; Uncharacterized protein
STRINGXP_007162833.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-41homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]