PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G150300.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 576aa    MW: 65010.6 Da    PI: 6.0835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G150300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.1e-16411458355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR+++N++f +Lr+++P       ++++Ka+iL  ++eYIk+L+
  Phvul.001G150300.1 411 TSHVMAERRRREKLNERFLTLRSMVPFV-----TRMDKASILGDTIEYIKQLR 458
                         79*************************8.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-569191IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.94E-19407470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.739408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13411457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-16411462No hitNo description
Gene3DG3DSA:4.10.280.102.0E-19411469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-18414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MAAPPNSRLQ SMLRAAVQSV QWTYSLFWQL CPQQGILTWG DGYYNGAIKT RKTVQAMEVS  60
TEEASLQRSE QLRELYESLS AGEANAQTRR PCAALSPEDL TESEWFYLLC VSFSFLPGDG  120
LPGTAYARRQ HLWLTGANEV ESRTFSRAIL AKSAHIQTVV CIPVLEGVVE LGTTEKMEED  180
INFIQHIKSF FIDEQPPTAK PAVSEHSTSN PTSSSYPVLV TATTVSPNQK HINVVHKGEE  240
EPKFNSEAGL VVHNTFIPTE LMELDTLQEF RVVSPGDGSH HLDSFPTEES MALCSAGLEL  300
LHLQLPPQPP EHPPTENIAQ GDTDTHYSQT VSSILQKNSG WWPDSPSVNH LTDSFQSAFN  360
KWNSGTDEYH GHFHMTVADV TSQWLLKYIL FSVPYLHANR LKAKGAPSYE TSHVMAERRR  420
REKLNERFLT LRSMVPFVTR MDKASILGDT IEYIKQLREK IERLEARERH PGKRRMGEVE  480
VSIIENDALL ELECVHREGL LLDVMTMLRE FGVEVMMVQS WVRDDGVFVA EMRARVKENG  540
KGKKTIVDVK NALNQIIPRH IPHHDPYTLP SNDHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-22819112192Transcription factor MYC3
4rqw_B2e-22819112192Transcription factor MYC3
4rs9_A2e-22819112192Transcription factor MYC3
4yz6_A2e-22819112192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416421ERRRRE
2417422RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G150300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495284.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1S3TNF20.0A0A1S3TNF2_VIGRR; basic helix-loop-helix protein A
STRINGGLYMA19G33770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]