PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G123300.1
Common NamePHAVU_001G123300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 461aa    MW: 50822 Da    PI: 8.9232
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G123300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-09173215345
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Phvul.001G123300.1 173 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 215
                         568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-7166218No hitNo description
PfamPF077166.6E-7171217IPR004827Basic-leucine zipper domain
SMARTSM003381.8E-7171234IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415173217IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7175218No hitNo description
CDDcd147081.99E-21175227No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
PfamPF141443.0E-30258332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGSRSRTVNV TSKDTNKVVN GMPSYAPPLP SSSSMGIEAT NVHPSRISEF GTLEQSLGFR  60
VEDTINLSRN PVFSQMKSNS QALGADIQFG ALNKSIVTSD INLSAAIAGS QTLALQKDAQ  120
PTLASTSGHR ENWGETNMAD ASPRTDTSTD DTEDKNQLPE RGESSDRSKD KSDQKTLRRL  180
AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQRARQ QGIFISSTGD QAQSMSGNGA  240
MAFDVEYARW LEEHNRQTNE LRAAINSHAG DIELRTIVDN FMAQFDDIFR LKGIAAKADV  300
FHILSGMWKT PAERCFMWIG GFRSSELLKL LVSHLEPLTE QQLMGIYNLQ QSSQQAEDAL  360
SQGMDALQQS LSETLANGSP SSSGSSGNVA NYMGQMAMAM GKLGTLEGFL RQADNLRQQT  420
LQQMLRILTT RQSARALLAI SDYFSRLRAL SSLWLARPRE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G123300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026090.0AF402609.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162093.10.0hypothetical protein PHAVU_001G123300g
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLQ93XA00.0Q93XA0_PHAVU; TGA-type basic leucine zipper protein TGA2.2
STRINGXP_007162093.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-142TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Tucker ML,Whitelaw CA,Lyssenko NN,Nath P
    Functional analysis of regulatory elements in the gene promoter for an abscission-specific cellulase from bean and isolation, expression, and binding affinity of three TGA-type basic leucine zipper transcription factors.
    Plant Physiol., 2002. 130(3): p. 1487-96
    [PMID:12428013]