PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G046500.1
Common NamePHAVU_001G046500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 289aa    MW: 31536.2 Da    PI: 7.7622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G046500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036108130123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C++ F ++  L  H++ H
  Phvul.001G046500.1 108 FSCNYCHRKFYSSQALGGHQNAH 130
                         89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-6105135No hitNo description
PROSITE profilePS5015711.406108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEGISKKEAY FCDRPSMFSS APEAPPSPST PLQHPHEKKQ VSVEEEEEEN KESKHATIVD  60
LNVSGDDSCT AEGLELNLIT CLDVGSSSNA NSSSEAPLGS DAAEPRVFSC NYCHRKFYSS  120
QALGGHQNAH KRERSIAKRG HRFGSQIMAF GLPLLHNNNH FASMASLPLY GASNNRGGAL  180
GIQAHSMIQK PSHHHVSGFG NSYAHHHSWS RPIIEQQPGI AKLAVADFHR TKSAFSSSQT  240
SVGRFEMVNT MMNSSAKKEI SGFVARAEPR LKSNNQEEMK HLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G046500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161148.10.0hypothetical protein PHAVU_001G046500g
TrEMBLV7CSK30.0V7CSK3_PHAVU; Uncharacterized protein
STRINGXP_007161148.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.15e-44C2H2 family protein