PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G022900.1
Common NamePHAVU_001G022900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 340aa    MW: 38843.6 Da    PI: 7.7224
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G022900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.9e-36251172103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+
  Phvul.001G022900.1  25 FLTKTYQLVDDPSTDHIVSWGEDHATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKQ 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Phvul.001G022900.1 107 LLCEIHRRKTH 117
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALLLDNCDS ILLSLDTHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDHAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKQLLCE IHRRKTHQQH  120
HQQQVHHHQF GLNVPPFFPF HNTLTVSPPH DSDELPNWCD SPPRAVTTGN NIINNNSHNT  180
VTALSEDNER LRRSNNMLMS ELAHMKKLYN DIIYFVQNHV KPVAPSNTYP SLLLCSNNNN  240
SHINNVSVKQ FVGCYSNNTK QARAVNSPTN SSITIVEEEP SSNSCKTKLF GVSLQSKKRV  300
HPEYGSNNLQ TSETNKSRLV VENDEFFGLN LMPPSTSFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-222111617122Heat shock factor protein 1
5d5u_B6e-222111626131Heat shock factor protein 1
5d5v_B6e-222111626131Heat shock factor protein 1
5d5v_D6e-222111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G022900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933310.0BT093331.1 Soybean clone JCVI-FLGm-24E17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160861.10.0hypothetical protein PHAVU_001G022900g
SwissprotQ9C6351e-109HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLV7CU980.0V7CU98_PHAVU; Uncharacterized protein
STRINGXP_007160861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-105heat shock transcription factor B4