PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G006200.1
Common NamePHAVU_001G006200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 267aa    MW: 30509.5 Da    PI: 4.4486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G006200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.9e-07141182955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r RR++i ++ +eL +l+P       +K++ a++L  + +Y+k Lq
  Phvul.001G006200.1 141 ARERRRKITNKTQELGKLVPGG-----TKMNTADMLNAVAKYVKFLQ 182
                         699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-11130192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.611132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10137191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-8138185No hitNo description
SMARTSM003531.5E-9138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-5142182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MIPDSETSTF NEAMSEEEVA PNIQHLFPYS DESFFLSNTL LENYIDPNAA FLYPSEIHSP  60
FDPFISLPHE DYNHFPCSKR QKLCFEEQQV LLHSQDLTPP TIDEFGNCYS FQSEETQQQQ  120
LFCMDEENGK ERTIYPQSVA ARERRRKITN KTQELGKLVP GGTKMNTADM LNAVAKYVKF  180
LQAQVGMLEL MNTLENEDEA TPPSQILHAL VVSPFVQEKL YVGEKCFLPK ETVTTLTKLE  240
DIQSKPTMLE ELKQQIGTDL KKPKQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G006200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-61AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160661.10.0hypothetical protein PHAVU_001G006200g
TrEMBLV7CTS90.0V7CTS9_PHAVU; Uncharacterized protein
STRINGXP_007160661.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-26bHLH family protein