PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl001423 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Dof | ||||||||||||
Protein Properties | Length: 752aa MW: 82979 Da PI: 5.8647 | ||||||||||||
Description | Dof family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.9 | 1.9e-37 | 312 | 371 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprCds tkfCyynny+++qPr+fCk C+ryWt GG++rnvPvG+grrknk+ Pgl001423 312 TDKLLRCPRCDSPGTKFCYYNNYNVNQPRHFCKDCQRYWTVGGTMRNVPVGAGRRKNKHL 371 67889****************************************************985 PP | |||||||
2 | Myb_DNA-binding | 31.7 | 3.6e-10 | 436 | 477 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT eE + l++a+ ++ + Wk +a+++g ++++ +c+sr+ + Pgl001423 436 EWTDEETLVLLEAIFLHNDD-WKCVAQHVG-TKSEADCVSRFIQ 477 7****************988.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.96E-30 | 63 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50934 | 27.698 | 64 | 161 | IPR007526 | SWIRM domain |
Gene3D | G3DSA:1.10.10.10 | 2.3E-31 | 65 | 162 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF04433 | 3.8E-28 | 67 | 152 | IPR007526 | SWIRM domain |
Pfam | PF02701 | 2.0E-30 | 314 | 370 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.931 | 316 | 370 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 318 | 354 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-24 | 318 | 369 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS51293 | 17.176 | 432 | 483 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-6 | 433 | 475 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.24E-11 | 433 | 490 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-8 | 433 | 481 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.27E-7 | 436 | 478 | No hit | No description |
Pfam | PF00249 | 1.6E-9 | 436 | 478 | IPR001005 | SANT/Myb domain |
Pfam | PF16495 | 8.3E-21 | 661 | 738 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MASPSNTNTS GNTNKDPNPE TTSNQAGSPH DSSNAGIADT ANPPTVLQPD FKEGSSPPRH 60 REIYKIPKYS SWFAWDKIHG TERRFLPEFF DEKSAAKTPK VYKEYRDFII NRYRKNPHKR 120 ISFTEVRKML VGDVNSIRRV FDFLDNWGLI NYQVASSKQH TKAEGNAGGV GEKGAATRVL 180 GQKGLAASEG DPPPGGTATN STVIDGKDKK GTEWQSGLLC NNCGADCSIA RFDCLKEVIS 240 PKSRDEDLSK EPGNSSGTND CNVEGVKTSK QDPEKELPVT AMEEESKDEK GDETNKEEVE 300 QNGNKDKLLR KTDKLLRCPR CDSPGTKFCY YNNYNVNQPR HFCKDCQRYW TVGGTMRNVP 360 VGAGRRKNKH LGTHYWHTMK SVGLTPARTG ASDAAHYSGF VLCPKCYENG NYGLGLSASD 420 FKRIELKEVS QQKSVEWTDE ETLVLLEAIF LHNDDWKCVA QHVGTKSEAD CVSRFIQLPF 480 GEQYIGNISN EVSDRRSSNV TGENTVIKQV SSPKDRSTQD LQDHVSNDDK HTMDDVLGPP 540 LKRRHLTPLA DASNPIMGQV AFLSAMVGSH VAEAAAHAAI AALSEEDPSA SQVTSTEEAE 600 CPNQKNGTGA SGLEGSPKDF AIEDSKKESH GGTDQTTEDG DSLAGEKEMT TPTVEMRAAT 660 ATALGSAAVR AKLLADQEDQ DIENLFSTVV DTQMKKLQER IQHFEEFDIV TEKERSQVEN 720 IKELLFADRI RFIQNTIKSR FSGSKEKELE AA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gjk_A | 1e-27 | 66 | 154 | 5 | 93 | SWI/SNF complex subunit SMARCC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NWA4 | 0.0 | A9NWA4_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-31 | cycling DOF factor 3 |